COPE-TFBS annotation results
TFBS breaking result
Summary statistics
| Category | Count |
|---|---|
| Variants uploaded | 4 |
| Variants within TFBSs | 2 |
| TFBSs affected | 3 |
| Multi-variant TFBSs | 2 |
Results preview
| Chromosome | Start | End | TF | Ref_PWM_score | Alt_PWM_score | Strand | Nearest_gene | Variant |
|---|---|---|---|---|---|---|---|---|
| 10 | 100091757 | 100091764 | HIF1A::ARNT_1 | 6.029 | 5.048 | - | NM_138469 (Name=R3HCC1L;Distance=142243bp) | 10_100091761_G/A_0|1(Position=5) |
| 10 | 100091753 | 100091766 | HIF1A_2 | 9.043 | 7.913 | - | NM_138469 (Name=R3HCC1L;Distance=142242bp) | 10_100091754_G/A_0|1(Position=2);10_100091761_G/A_0|1(Position=9) |
| 10 | 100091754 | 100091765 | HIF1A_1 | 7.917 | 6.917 | - | NM_138469 (Name=R3HCC1L;Distance=142242bp) | 10_100091754_G/A_0|1(Position=1);10_100091761_G/A_0|1(Position=8) |
TFBS gain result
Summary statistics
| Category | Count |
|---|---|
| Variants uploaded | 4 |
| variants creating novel TFBSs | 2 |
| Novel TFBSs | 1 |
| Transcripts affected | 2 |
Results preview
| Chromosome | Start | End | TF | Sequnece | PWM_score | Transcript | Strand | Variant |
|---|---|---|---|---|---|---|---|---|
| 5 | 1295224 | 1295229 | ETS_known8 | TTTCCG | 5.743 | NM_198253 (Name=TERT) | - | 5_1295228_G/A_0|1(Position=5);5_1295229_G/A_0|1(Position=6) |
| 5 | 1295224 | 1295229 | ETS_known8 | TTTCCG | 5.743 | NM_001193376 (Name=TERT) | - | 5_1295228_G/A_0|1(Position=5);5_1295229_G/A_0|1(Position=6) |
